News
- Shuzhao Li lab has moved to The Jackson Laboratory for Genomic Medicine. And we are hiring!
- Springer book "Computational Methods and Data Analysis for Metabolomics" is out! At Springer; On Amazon
- Integrating metabolomics and exposomics (HiCoNet)
- Integrating metabolomics, transcriptomics and microbiome in seasonal influenza vaccination Hagan et al, 2019. Cell, 178(6), pp.1313
- Web version is now testing at here.
- Mummichog 2 is now on GitHub. Now Python 3 compatible.
- MetaboAnalyst 4 has implemented Mummichog 2.
- A common error, "AttributeError: 'NodeView' object has no attribute 'sort’", is caused by Networkx 2.x, which is not backward compatible. This can be fixed by installing Networkx 1.x via pip in your terminal, "sudo pip install networkx==1.10".
- Mummichog 2 test version is available at Pypi.
- Mummichog version 1.0.10 is available at Pypi.
- Mummichog helped decipher metabolic phenotypes in human vaccination - Li et al. (2017) at Cell 169(5): p862-877. Also see commentary "Orthogonal Data Integration to Define Immunometabolic-Phenotypes" at Cell Systems.